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@article{ eatonrosen_ni2017,
  Author={Eaton-Rosen, Z and Scherrer, Benoit and Melbourne, A and Ourselin, S and Neil, JJ and Warfield, Simon K},
  Title={{Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI}},
  Journal={Neuroimage},
  Pages={65-72},
  Volume={162},
  Year={2017},
  doi={10.1016/j.neuroimage.2017.08.013}
}
@article{ rensonnet_mrm2017,
  Author={Rensonnet, Gaetan and Scherrer, Benoit and Warfield, Simon K and Macq, Benoit and Taquet, Maxime},
  Title={{Assessing the validity of the approximation of DW-MRI signals from crossing fascicles by sums of signals from single fascicles}},
  Journal={Magn Reson Med},
  Pages={Online early view},
  Year={2017},
  doi={10.1002/mrm.26832}
}
@article{ nmr2017,
  Author={Scherrer, Benoit and Ferizi, U and Schneider, T and Alipoor, M and Eufracio, O and Fick, RHJ and Deriche, R and Nilsson, M and Loya-Olivas, AK and Rivera, M and Poot, DHJ and Ramirez-Manzanares, A and Marroquin, JL and Rokem, A and Potter, C and Dougherty, RF and Sakaie, K and Wheeler-Kingshott, C and Warfield, SK and Witzel, T and Wald, LL and Raya, JG and Alexander, DC},
  Title={{Diffusion MRI microstructure models with in vivo human brain Connectom data: results from a multi-group comparison}},
  Journal={NMR in Biomed},
  Volume={9},
  Number={30},
  Year={2017},
  doi={10.1002/nbm.3734}
}
@article{ chamberland_hbm2017,
  Author={Chamberland, Maxime and Scherrer, Benoit and Prabhu, Sanjay P and Madsen, Joseph and Fortin, David and Whittingstall, Kevin and Descoteaux, Maxime and Warfield, Simon K.},
  Title={{Active Delineation of Meyer's Loop Using Oriented Priors Through MAGNEtic Tractography (MAGNET)}},
  Journal={Hum. Brain Map.},
  Pages={509-527},
  Volume={38},
  Number={1},
  Year={2017},
  doi={10.1002/hbm.23399}
}
@article{ hedoin_tmi2017,
  Author={Hedouin, Renaud and Commowick, Olivier and Bannier, Elise and Scherrer, Benoit and Taquet, Maxime and Warfield, Simon K and Barillot, Christian},
  Title={{Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions}},
  Journal={IEEE Trans. Med. Imag.},
  Pages={1106-1115},
  Volume={36},
  Number={5},
  Year={2017},
  doi={10.1109/TMI.2016.2646920}
}
@article{ marami_ni2017,
  Author={Marami, Bahram and Mohseni Salehi, Seyed Sadegh and Afacan, Onur and Scherrer, Benoit and Rollins, Caitlin K and Yang, Edward and Estroff, Judy A and Warfield, Simon K and Gholipour, Ali},
  Title={{Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis}},
  Journal={Neuroimage},
  Pages={475-488},
  Volume={156},
  Year={2017},
  doi={10.1016/j.neuroimage.2017.04.033}
}
@article{ marami_tmi2016,
  Author={Marami, Bahram and Scherrer, Benoit and Afacan, Onur and Erem, Burak and Warfield, Simon K. and Gholipour, Ali},
  Title={{Motion-robust diffusion-weighted brain MRI reconstruction through slice-level registration-based motion tracking}},
  Journal={IEEE Trans. Med. Imag.},
  Pages={2258-2269},
  Volume={35},
  Number={10},
  Year={2016},
  doi={10.1109/TMI.2016.2555244}
}
@article{ scherrer_mrm2016,
  Author={Scherrer, Benoit and Schwartzman, Armin and Taquet, Maxime and Sahin, Mustafa and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{Characterizing brain tissue by assessment of the distribution of anisotropic microstructural environments in diffusion-compartment imaging (DIAMOND)}},
  Journal={Magn Reson Med},
  Pages={963-77},
  Volume={76},
  Number={3},
  Year={2016},
  doi={10.1002/mrm.25912}
}
@article{ taquet_media2015,
  Author={Taquet, Maxime and Scherrer, Benoit and Boumal, Nicolas and Peters, Jurriaan M. and Macq, Benoit and Warfield, Simon K.},
  Title={{Improved Fidelity of Brain Microstructure Mapping from Single-Shell Diffusion MRI}},
  Journal={Med Imag Analysis},
  Pages={268-286},
  Volume={26},
  Number={1},
  Year={2015},
  doi={10.1016/j.media.2015.10.004}
}
@article{ gholipour_medphys2015,
  Author={Gholipour, Ali and Afacan, Onur and Aganj, Iman and Scherrer, Benoit and Prabhu, Sanjay P and Sahin, Mustafa and Warfield, Simon K.},
  Title={{Super-resolution reconstruction in frequency, image, and wavelet domains to reduce through-plane partial voluming in MRI}},
  Journal={Medical Physics},
  Volume={42},
  Number={12},
  Year={2015},
  doi={10.1118/1.4935149}
}
@article{ peters_neurology2015,
  Author={Peters, Jurrriaan M. and Prohl, Anna K. and Tomas-Fernandez, Xavier and Taquet, Maxime and Scherrer, Benoit and Prabhu, Sanjay P. and Lidov, Hart G and Singh, Jolene M and Jansen, Floor E and Braun, Kees PJ and Sahin, Mustafa and Warfield, Simon K. and Stamm, Aymeric},
  Title={{Tubers are neither static nor discrete: Evidence from serial diffusion tensor imaging}},
  Journal={Neurology},
  Pages={1536-45},
  Volume={85},
  Number={18},
  Year={2015},
  doi={10.1212/WNL.0000000000002055}
}
@article{ taquet_tmi2014,
  Author={Taquet, Maxime and Scherrer, Benoit and Commowick, Olivier and Peters, Jurrriaan M. and Sahin, Mustafa and Macq, Benoit and Warfield, Simon K.},
  Title={{A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure}},
  Journal={IEEE Trans Med Imaging},
  Pages={504-17},
  Volume={2},
  Number={33},
  Year={2014},
  doi={10.1109/TMI.2013.2289381}
}
@article{ peterstaquet_futureneuro2013,
  Author={Peters, Jurrriaan M. and Taquet, Maxime and Prohl, Anna K. and Scherrer, Benoit and Van Eeghen, Agnies M. and Prabhu, Sanjay P. and Sahin, Mustafa and Warfield, Simon K.},
  Title={{Diffusion Tensor Imaging and Related Techniques in Tuberous Sclerosis Complex: Review and Future Directions}},
  Journal={Future Neurology},
  Pages={583-597},
  Volume={8},
  Number={5},
  Year={2013},
  doi={10.2217/fnl.13.37}
}
@article{ hammond_tmi2013,
  Author={Hammond, David and Scherrer, Benoit and Warfield, Simon K.},
  Title={{Cortical graph smoothing : a novel method for exploiting DWI-derived anatomical brain connectivity to improve EEG source estimation}},
  Journal={IEEE Trans Med Imaging},
  Pages={1952-1963},
  Volume={32},
  Number={10},
  Year={2013},
  doi={10.1109/TMI.2013.2271486}
}
@article{ lewis_ccortex2013,
  Author={Lewis, William W. and Sahin, Mustafa and Scherrer, Benoit and Peters, Jurriaan M. and Suarez, Ralph O. and Vogel-Farley, Vanessa K. and Jeste, Shafali S. and Gregas, Matthew C. and Prabhu, Sanjay P. and Nelson, Charles A. and Warfield, Simon K.},
  Title={{Impaired Language Pathways in Tuberous Sclerosis Complex Patients with Autism Spectrum Disorders}},
  Journal={Cereb Cortex},
  Pages={1526-1532},
  Volume={23},
  Number={7},
  Year={2013},
  doi={10.1093/cercor/bhs135}
}
@article{ bscherrer_plosone2012,
  Author={Scherrer, Benoit and Warfield, Simon K.},
  Title={{Parametric Representation of Multiple White Matter Fascicles from Cube and Sphere Diffusion MRI}},
  Journal={PLoS ONE},
  Volume={7},
  Number={11},
  Year={2012},
  doi={10.1371/journal.pone.0048232}
}
@article{ bscherrer_media2012,
  Author={Scherrer, Benoit and Gholipour, Ali and Warfield, Simon K.},
  Title={{Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions}},
  Journal={Med Imag Analysis},
  Pages={1465-1476},
  Volume={16},
  Number={7},
  Year={2012},
  doi={10.1016/j.media.2012.05.003}
}
@article{ peters_acadrad2012,
  Author={Peters, Jurriaan M. and Sahin, Mustafa and Vogel-Farley, V. K. and Jeste, S. S. and Nelson, C. A. and Gregas, M. C. and Prabhu, Sanjay P. and Scherrer, Benoit and Warfield, Simon K.},
  Title={{Loss of white matter microstructural integrity is associated with adverse neurological outcome in tuberous sclerosis complex}},
  Journal={Acad Radiol},
  Pages={17-25},
  Volume={19},
  Number={1},
  Year={2012},
  doi={10.1016/j.acra.2011.08.016}
}
@article{ forbes_jsfs2011,
  Author={Forbes, Florence and Scherrer, Benoit and Dojat, Michel},
  Title={{Bayesian Markov model for cooperative clustering: application to robust MRI brain scan segmentation}},
  Journal={Journal de la Société Française de Statistique},
  Volume={152},
  Number={3},
  Year={2011}
}
@article{ bscherrer_tmi09,
  Author={Scherrer, Benoit and Forbes, Florence and Garbay, Catherine and Dojat, Michel},
  Title={{Distributed Local MRF Models for Tissue and Structure Brain Segmentation}},
  Journal={IEEE Transactions on Medical Imaging},
  Pages={1278-1295},
  Volume={28},
  Number={8},
  Year={2009},
  doi={10.1109/TMI.2009.2014459}
}
@article{ bscherrer_aim09,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{Agentification of Markov model-based segmentation: Application to magnetic resonance brain scans}},
  Journal={Artificial Intelligence in Medicine (AIM)},
  Pages={81-95},
  Volume={46},
  Number={1},
  Year={2009},
  doi={10.1016/j.artmed.2008.08.012}
}


@inbook{ taquet_2015,
  Author={Taquet, Maxime and Scherrer, Benoit and Warfield, Simon K},
  Title={{A Framework for the Analysis of Diffusion Compartment Imaging (DCI)}},
  Booktitle={In Visualization and Processing of Higher Order Descriptors for Multi-Valued Data},
  Pages={217-297},
  Year={2015},
  doi={10.1007/978-3-319-15090-1_14}}
@inbook{ bscherrer_cih2010,
  Author={Scherrer, Benoit and Forbes, Florence and Garbay, Catherine and Dojat, Michel},
  Title={{A joint Bayesian framework for MR brain scan tissue and structure segmentation based on distributed Markovian agents}},
  Booktitle={In I. Bichindaritz and eds. L. Jain editors, Computational Intelligence in Healtcare},
  Volume={309},
  Pages={81-101},
  Year={2010},
  doi={10.1007/978-3-642-14464-6_5}}


@inproceedings{ scherrer_ipmi2017,
  Author={Scherrer, Benoit and Taquet, Maxime and Schwartzman, Armin and St-Onge, Etienne and Rensonnet, Gaetan and Prabhu, Sanjay P and Warfield, Simon K},
  Title={{Decoupling axial and radial tissue heterogeneity in diffusion compartment imaging}},
  Booktitle={Proc. of the 25th Int Conf Inf Process Med Imaging (IPMI)},
  Pages={accepted},
  Location={Boone, USA},
  Year={2017}
}
@inproceedings{ marami_miccai2016,
  Author={Marami, Bahram and Scherrer, Benoit and Afacan, Onur and Warfield, Simon K and Gholipour, Ali},
  Title={{Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects.}},
  Booktitle={Proc. of the 19th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={544-552},
  Number={9902},
  Location={Athens, Greece},
  Year={2016},
  doi={10.1007/978-3-319-46726-9_63}
}
@inproceedings{ bscherrer_ipmi2015,
  Author={Scherrer, Benoit and Afacan, Onur and Taquet, Maxime and Prabhu, Sanjay P and Gholipour, Ali and Warfield, Simon K.},
  Title={{Accelerated High Spatial Resolution Diffusion-Weighted Imaging}},
  Booktitle={Proc. of the 24th Int Conf Inf Process Med Imaging (IPMI)},
  Pages={69-81},
  Volume={LNCS 9123},
  Location={Isle of Skye, Scotland, UK},
  Year={2015},
  doi={10.1007/978-3-319-19992-4_6}
}
@inproceedings{ scherrer_spie2015,
  Author={Scherrer, Benoit and Afacan, Onur and Stamm, Aymeric and Singh, Jolene and Warfield, Simon K},
  Title={{Optimized magnetic resonance diffusion protocol for ex-vivo whole human brain imaging with a clinical scanner.}},
  Booktitle={Proc. SPIE Medical Imaging},
  Location={Orlando, USA},
  Year={2015},
  doi={10.1117/12.2082387}
}
@inproceedings{ taquet_miccai2014,
  Author={Taquet, Maxime and Scherrer, Benoit and Peters, Jurriaan M. and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{A Fully Bayesian Inference Framework for Population Studies of the Brain Microstructure.}},
  Booktitle={Proc. of the 17th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={25-32},
  Number={8673},
  Location={Boston, USA},
  Year={2014},
  doi={10.1007/978-3-319-10404-1_4}
}
@inproceedings{ scherrer_miccai2013,
  Author={Scherrer, Benoit and Schwartzman, Armin and Taquet, Maxime and Prabhu, Sanjay P. and Sahin, Mustafa and Akhondi-Asl, Alireza and Warfield, Simon K},
  Title={{Characterizing the DIstribution of Anisotropic MicrO-structural eNvironments with Diffusion-weighted imaging (DIAMOND).}},
  Booktitle={Proc. of the 16th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={518-526},
  Number={8151},
  Location={Nagoya, Japan},
  Year={2013},
  doi={10.1007/978-3-642-40760-4_65}
}
@inproceedings{ taquet_miccai2013,
  Author={Taquet, Maxime and Scherrer, Benoit and Boumal, Nicolas and Macq, Benoit and Warfield, Simon K},
  Title={{Estimation of a Multi-Fascicle Model from Single B-Value Data with a Population-Informed Prior.}},
  Booktitle={Proc. of the 16th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={695-702},
  Volume={8149},
  Location={Nagoya, Japan},
  Year={2013},
  doi={10.1007/978-3-642-40811-3_87}
}
@inproceedings{ bscherrer_ipmi2013,
  Author={Scherrer, Benoit and Taquet, Maxime and Warfield, Simon K.},
  Title={{Reliable Selection of the Number of Fascicles in Diffusion Images by Estimation of the Generalization Error}},
  Booktitle={Proc. of the 23rd Int Conf Inf Process Med Imaging (IPMI)},
  Pages={742--753},
  Volume={LNCS 7917},
  Location={Asilomar, USA},
  Year={2013},
  doi={10.1007/978-3-642-38868-2_62}
}
@inproceedings{ bscherrer_isbi2013,
  Author={Scherrer, Benoit and Suarez, Ralph O. and Warfield, Simon K.},
  Title={{Automatic delineation of white matter fascicles by localization based upon anatomical spatial relationships}},
  Booktitle={Proc. of the 10th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Location={San Francisco, USA},
  Year={2013}
}
@inproceedings{ scherrer_mmbia2012,
  Author={Scherrer, Benoit and Gholipour, Ali and Warfield, Simon K},
  Title={{Super-Resolution Reconstruction of Diffusion-Weighted Images from Distortion Compensated Orthogonal Anisotropic Acquisitions}},
  Booktitle={Proc. of the 12th IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA)},
  Pages={249-256},
  Location={Breckenridge, USA},
  Year={2012},
  doi={10.1109/MMBIA.2012.6164759}
}
@inproceedings{ bscherrer_isbi2012,
  Author={Scherrer, Benoit and Warfield, Simon K},
  Title={{Retrospective local artefact detection in diffusion-weighted images using the random sample consensus (RANSAC) paradigm}},
  Booktitle={Proc. of the 9th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Pages={546-549},
  Location={Barcelona, Spain},
  Year={2012},
  doi={10.1109/ISBI.2012.6235606}
}
@inproceedings{ taquet_miccai2012,
  Author={Taquet, Maxime and Scherrer, Benoit and Commowick, Olivier and Peters, Jurriaan and Sahin, Mustafa and Macq, Benoit and Warfield, Simon K},
  Title={{Registration and analysis of white matter group differences with a multi-fiber model}},
  Booktitle={Proc. of the 15th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={313-320},
  Volume={15},
  Number={3},
  Location={Nice, France},
  Year={2012},
  doi={10.1007/978-3-642-33454-2_39}
}
@inproceedings{ taquet_isbi2012,
  Author={Taquet, Maxime and Scherrer, Benoit and Benjamin, Christopher and Prabhu, Sanjay and Macq, Benoit and Warfield, Simon K.},
  Title={{Interpolating multi-fiber models by Gaussian mixture simplification}},
  Booktitle={Proc. of the 9th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Pages={928-931},
  Location={Barcelona, Spain},
  Year={2012},
  doi={10.1109/ISBI.2012.6235708}
}
@inproceedings{ akhondiasl_isbi2012,
  Author={Akhondi-Asl, Alireza and Hans, Arne and Scherrer, Benoit and Peters, Jurriaan M. and Warfield, Simon K.},
  Title={{Whole brain group network analysis using network bias and variance parameters}},
  Booktitle={Proc. of the 9th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Pages={1511-1514},
  Location={Barcelona, Spain},
  Year={2012},
  doi={10.1109/ISBI.2012.6235859}
}
@inproceedings{ hammond_icasp2012,
  Author={Hammond, David K. and Scherrer, Benoit and Malony, A},
  Title={{Incorporating anatomical connectivity into EEG source estimation via sparse approximation with cortical graph wavelets}},
  Booktitle={Proc. of the 37th IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},
  Pages={573-576},
  Location={Kyoto, Japan},
  Year={2012},
  doi={10.1109/ICASSP.2012.6287944}
}
@inproceedings{ scherrer_miccai2011,
  Author={Scherrer, Benoit and Gholipour, Ali and Warfield, Simon K},
  Title={{Super-Resolution in Diffusion-Weighted Imaging}},
  Booktitle={Proc. of the 14th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={124-132},
  Volume={14},
  Number={2},
  Location={Toronto, Canada},
  Year={2011},
  doi={10.1007/978-3-642-23629-7_16}
}
@inproceedings{ bscherrer_isbi2011,
  Author={Scherrer, Benoit and Warfield, Simon K},
  Title={{Toward an accurate multi-fiber assessment strategy for clinical practice}},
  Booktitle={Proc. of the 8th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Pages={2140-2143},
  Location={Chicago, USA},
  Year={2011},
  doi={10.1109/ISBI.2011.5872836}
}
@inproceedings{ gholipour_embc2011,
  Author={Gholipour, Ali and Kehtarnavaz, Nasser and Scherrer, Benoit and Warfield, Simon K},
  Title={{On the Accuracy of Unwarping Techniques for the Correction of Susceptibility-Induced Geometric Distortion in Magnetic Resonance Echo-Planar Images}},
  Booktitle={Proc. of the 33rd Annual International IEEE EMBS Conference},
  Location={Boston, USA},
  Year={2011},
  doi={10.1109/IEMBS.2011.6091769}
}
@inproceedings{ bscherrer_isbi2010,
  Author={Scherrer, Benoit and Warfield, Simon K},
  Title={{Why multiple b-values are required for multi-tensor models. Evaluation with a constrained log-Euclidean model}},
  Booktitle={Proc. of the 7th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Pages={1389-1392},
  Location={Rotterdam, Netherlands},
  Year={2010},
  doi={10.1109/ISBI.2010.5490257}
}
@inproceedings{ bscherrer_miccai09,
  Author={Scherrer, Benoit and Forbes, Florence and Dojat, Michel},
  Title={{A Conditional Random Field Approach for Coupling Local Registration with Robust Tissue and Structure Segmentation}},
  Booktitle={Proc. of the 12th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={540-548},
  Volume={12},
  Number={1},
  Location={London, England},
  Year={2009},
  doi={10.1007/978-3-642-04271-3_66}
}
@inproceedings{ bscherrer_miccai08,
  Author={Scherrer, Benoit and Forbes, Forbes and Garbay, Catherine and Dojat, Michel},
  Title={{Fully Bayesian Joint Model for MR Brain Scan Tissue and Structure Segmentation}},
  Booktitle={Proc. of the 11th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={1066-1074},
  Volume={11},
  Number={2},
  Location={New-York, USA},
  Year={2008},
  doi={10.1007/978-3-540-85990-1_128}
}
@inproceedings{ bscherrer_miccai07,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{LOCUS: LOcal Cooperative Unified Segmentation of MRI Brain Scans}},
  Booktitle={Proc. of the 10th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={219-227},
  Volume={10},
  Number={1},
  Location={Brisbane, Australia},
  Year={2007},
  doi={10.1007/978-3-540-73599-1_2}
}
@inproceedings{ bscherrer_aime07,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{MRF Agent Based Segmentation: Application to MRI Brain Scans}},
  Booktitle={Proc. of the 11th Conference on Artificial Intelligence In Medicine (AIME)},
  Pages={13-23},
  Year={2007},
  doi={10.1007/978-3-540-73599-1_2}
}
@inproceedings{ ky_embc07,
  Author={Kabir, Yacine and Dojat, Michel and Scherrer, Benoit and Forbes, Florence and Garbay, Catherine},
  Title={{Multimodal MRI segmentation of ischemic stroke lesions}},
  Booktitle={Conf Proc IEEE Eng Med Biol Soc., Lyon},
  Year={2007},
  doi={10.1109/IEMBS.2007.4352610}
}
@inproceedings{ bscherrer_jetim06,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{Une Approche SMA pour la Segmentation Markovienne des Tissus et Structures Présents dans les IRM Cérébrales}},
  Year={2006}
}
@inproceedings{ bscherrer_rfia06,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{Segmentation Markovienne Distribuée et Coopérative des Tissus et Structures Présents dans des IRM Cérébrales}},
  Booktitle={RFIA, Tour},
  Year={2006}
}


@inproceedings{ scherrer_ismrm2017a,
  Author={Scherrer, Benoit and Qiu, Jianhua and Hashim, Jumana and Afacan, Onur and Wu, Yaotang and Marcotrigiano, Michael and Warfield, Simon K and Mannix, Rebekah},
  Title={{Diffusion compartment imaging reveals microstructural injuries in a mouse model of mild traumatic brain injury}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ scherrer_ismrm2017b,
  Author={Scherrer, Benoit and Taquet, Maxime and St-Onge, Etienne and Rensonnet, Gaetan and Warfield, Simon K},
  Title={{A novel diffusion compartment imaging (DCI) model that captures the asymmetry of WM microstructure heterogeneity}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ rensonnet_ismrm2017,
  Author={Rensonnet, Gaetan and Scherrer, Benoit and Warfield, Simon K and Macq, Benoit and Taquet, Maxime},
  Title={{Microstructure imaging from a dictionary of Monte Carlo signals: assessment on a rat spinal cord model of Wallerian degeneration}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ afacan_ismrm2017,
  Author={Afacan, Onur and Gholipour, Ali and Scherrer, Benoit and Warfield, Simon K},
  Title={{Evaluation of convex programming for super-resolution MRI reconstruction using shifted slice acquisitions}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ stonge_ismrm2017,
  Author={St-Onge, Etienne and Scherrer, Benoit and Taquet, Maxime and Warfield, Simon K},
  Title={{Multi-Tensor Filtering based on Expectation-Maximization Framework}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ mirzaalian_ismrm2017,
  Author={Mirzaalian, Hengameh and Scherrer, Benoit and Afacan, Onur and Gholipour, Ali and Warfield, Simon K},
  Title={{Performance assessment of EPI-distortion correction of brain images; which plane and phase encoding direction should be chosen?}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ scherrer_ismrm2016,
  Author={Scherrer, Benoit and Jacobs, Damien and Taquet, Maxime and Des Rieux, Anne and Macq, Benoit and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{Measurement of restricted and hindered anisotropic diffusion tissue compartments in a rat model of Wallerian degeneration}},
  Booktitle={Proc. the 24th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Singapore},
  Year={2016}
}
@inproceedings{ chamberland_ismrm2016,
  Author={Chamberland, Maxime and Scherrer, Benoit and Prabhu, Sanjay P. and Madsen,Joseph and Fortin,David and Whittingstall,Kevin and Descoteaux, Maxime and Warfield, Simon K},
  Title={{Magnetic ROIs enable improved tractography accuracy through oriented prior}},
  Booktitle={Proc. the 24th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Singapore},
  Year={2016}
}
@inproceedings{ scherrer_ismrm2016b,
  Author={Scherrer, Benoit and Majeed, Amara and Afacan, Onur and Singh, Jolene M. and Warfield, Simon K and Sanders, Stephen P.},
  Title={{Right Ventricular Myofiber Architecture}},
  Booktitle={Proc. the 24th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Singapore},
  Year={2016}
}
@inproceedings{ scherrer_ismrm_2015highres,
  Author={Scherrer, Benoit and Gholipour, Ali and Afacan, Onur and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{Accelerated Motion-Robust Non-Cartesian Multi-Shot Diffusion-Weighted Imaging with Reconstruction in the Image Space}},
  Booktitle={Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Toronto, Canada},
  Year={2015}
}
@inproceedings{ fernandez_ismrm_2015,
  Author={Tomas-Fernandez, Xavier and Scherrer, Benoit and Wan, Catherine and Warfield, Simon K},
  Title={{Arcuate Fasciculus Delineation by Means of Diffusion Compartment Imaging Based Tractography}},
  Booktitle={Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Toronto, Canada},
  Year={2015}
}
@inproceedings{ jacobs_ismrm_2015a,
  Author={Jacobs, Damien and Scherrer, Benoit and Jankovski, Aleksandar and des Rieux, Anne and Taquet, Maxime and Gallez, Bernard and Warfield, Simon K. and Macq, Benoit},
  Title={{Characterization of the Wallerian Degeneration Process in the Rat Spinal Cord with DIAMOND and NODDI: Comparison with Histological Obervations}},
  Booktitle={Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Toronto, Canada},
  Year={2015}
}
@inproceedings{ jacobs_ismrm_2015b,
  Author={Jacobs, Damien and Scherrer, Benoit and Jankovski, Aleksandar and des Rieux, Anne and Taquet, Maxime and Gallez, Bernard and Warfield, Simon K. and Macq, Benoit},
  Title={{Longitudinal Characterization of the Wallerian Degeneration Process by a Multi-Compartment Diffusion Model: DIAMOND After a Rhizotomy in the Rat Spinal Cord and Comparison with the Histology}},
  Booktitle={Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Toronto, Canada},
  Year={2015}
}
@inproceedings{ stamm_ismrm_2015,
  Author={Stamm, Aymeric and Afacan, Onur and Scherrer, Benoit and Singh, Jolene M. and Warfield, Simon K.},
  Title={{In-Vivo High Resolution Imaging of Fine-Scale Anatomical Structures at 3T with Simultaneous Bias/Variance Reduction}},
  Booktitle={Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Toronto, Canada},
  Year={2015}
}
@inproceedings{ scherrer_ismrm_2014diamond,
  Author={Scherrer, Benoit and Taquet, Maxime and Sahin, Mustafa and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{A novel biophysical model that characterizes the distribution of anisotropic micro-structural environments with DWI}},
  Booktitle={Proc. the 22th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Milan, Italy},
  Year={2014}
}
@inproceedings{ scherrer_ismrm_2014srr,
  Author={Scherrer, Benoit and Gholipour, Ali and Sahin, Mustafa and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{Super-resolution multi-fascicle imaging reveals the presence of both radial and tangential diffusion in the mature cortex using a clinical scanner}},
  Booktitle={Proc. the 22th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Milan, Italy},
  Year={2014}
}
@inproceedings{ scherrer_ismrm_2014ge,
  Author={Scherrer, Benoit and Taquet, Maxime and Sahin, Mustafa and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{Quantitative evaluation of biophysical models of the diffusion with in vivo data by assessment of the generalization error}},
  Booktitle={Proc. the 22th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Milan, Italy},
  Year={2014}
}
@inproceedings{ scherrer_ismrm_workshop2013,
  Author={Scherrer, Benoit and Schwartzman, Armin and Taquet, Maxime and Prabhu, Sanjay P. and Sahin, Mustafa and Warfield, Simon K},
  Title={{DIAMOND: a novel biophysical diffusion model that characterizes the distribution of anisotropic micro-structural environments with DWI}},
  Booktitle={ISMRM Workshop 'Diffusion as a Probe of Neural Tissue Microstructure'},
  Location={Podstrana, Croatia},
  Year={2013}
}
@inproceedings{ scherrer_ismrm2013a,
  Author={Scherrer, Benoit and Warfield, Simon K},
  Title={{Accurate estimation of a multiple fascicle model is enabled by manipulation of gradient strength in a two-shell HARDI to achieve low TE}},
  Booktitle={Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Salt Lake City, USA},
  Year={2013}
}
@inproceedings{ scherrer_ismrm2013b,
  Author={Scherrer, Benoit and Taquet, Maxime and Afacan, Onur and Warfield, Simon K},
  Title={{Does the signal arising from a single fascicle significantly deviates from a monoexponential decay with a clinical scanner?}},
  Booktitle={Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Salt Lake City, USA},
  Year={2013}
}
@inproceedings{ taquet_ismrm2013,
  Author={Taquet, Maxime and Scherrer, Benoit and Macq, Benoit and Warfield, Simon K},
  Title={{Multi-Fascicle Model Reconstruction from Acquisitions of DWI at a Single B-Value with a Population-Informed Prior}},
  Booktitle={Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Salt Lake City, USA},
  Year={2013}
}
@inproceedings{ afacan_ismrm2013,
  Author={Afacan, Onur and Gholipour, Ali and Scherrer, Benoit and Warfield, Simon K},
  Title={{Motion Detection for Diffusion Weighted MRI Using EPI Phase Correction Lines}},
  Booktitle={Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Salt Lake City, USA},
  Year={2013}
}
@inproceedings{ scherrer_ismrm2012a,
  Author={Scherrer, Benoit and Gholipour, Ali and Warfield, Simon K},
  Title={{Increasing the resolution of diffusion-weighted MRI with distortion compensated orthogonal acquisitions and super-resolution reconstruction}},
  Booktitle={Proc. the 20th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Melbourne, Australia},
  Year={2012}
}
@inproceedings{ scherrer_ismrm2012b,
  Author={Scherrer, Benoit and Sahin, Mustafa and Stamoulis, Caterina and Prabhu, Sanjay and Akhondi-Asl, Alireza and Warfield, Simon K.},
  Title={{Globally impaired network of anatomical connectivity in tuberous sclerosis complex patients with autism spectrum disorders}},
  Booktitle={Proc. the 20th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Melbourne, Australia},
  Year={2012}
}
@inproceedings{ akhondiasl_ismrm2012,
  Author={Akhondi-Asl, Alireza and Hans, Arne and Scherrer, Benoit and Peters, Jurriaan M. and Warfield, Simon K.},
  Title={{Whole brain connectivity analysis using resting state functional MRI in pediatric TSC patients}},
  Booktitle={Proc. the 20th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Melbourne, Australia},
  Year={2012}
}
@inproceedings{ bscherrer_ismrm2011,
  Author={Scherrer, Benoit and Warfield, Simon K.},
  Title={{Characterizing Complex White Matter Structure from Cube and Sphere Diffusion Imaging with a Multi-Fiber Model (CUSP-MFM)}},
  Booktitle={Proc. the 19th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Montreal, Canada},
  Year={2011}
}
@inproceedings{ bscherrer_hbm2011,
  Author={Scherrer, Benoit and Warfield, Simon K},
  Title={{Selecting the number of fibers in a Multi-Fiber Model from CUbe and SPhere (CUSP) Diffusion Imaging}},
  Booktitle={Proc. of the Human Brain Mapping Conference (HBM)},
  Location={Quebec, Canada},
  Year={2011}
}
@inproceedings{ hammond_ninf2011,
  Author={Hammond, David and Scherrer, Benoit},
  Title={{EEG Source Estimation via Cortical Graph Smoothing}},
  Booktitle={INCF NeuroInformatics},
  Location={Boston, USA},
  Year={2011}
}
@inproceedings{ bscherrer_ismrm2010,
  Author={Scherrer, Benoit and Warfield, Simon K.},
  Title={{Optimal HARDI acquisition schemes for multi-tensor models}},
  Booktitle={Proc. the 18th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Stockholm, Sweden},
  Year={2010}
}
@inproceedings{ bscherrer_hbm06,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{Distributed and Cooperative Markovian Segmentation of Tissues and Structures in MRI Brain Scans}},
  Booktitle={Human Brain Mapping},
  Location={Florence, Italie},
  Year={2006}
}

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